CDS

Accession Number TCMCG007C09683
gbkey CDS
Protein Id XP_018511620.2
Location join(26944167..26944704,26944895..26944941,26945060..26945172,26945424..26945607,26945712..26946002,26946113..26946172,26946257..26946868,26947131..26947594,26947701..26948499)
Gene LOC103847375
GeneID 103847375
Organism Brassica rapa

Protein

Length 1035aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_018656104.2
Definition nuclear pore complex protein NUP1 isoform X2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category UY
Description Nuclear pore complex protein
KEGG_TC 1.I.1
KEGG_Module M00427        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14317        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
ko05169        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map05169        [VIEW IN KEGG]
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0006997        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016973        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034399        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTTACCAGAAAAGACGATTATACCCTCACTAATCTGCGTCGCTTTTACGCTCCTCTCCTTTTATTTTGGTCTCGGTACGCTCCTCCCTCTCGATATCGGGCGCCACAAATTAAAAAAAAAATAAAAAACCCTAATCCCCAAATTTTTCGATTTTTCCTTTCGCGGAAAAAGTTCGTTGAAAACCCTAGATTGGATCTCACGTTTTCGTTTCGGCTGATGGCGAGCGCGGCACGGGGAGAGAGCAGCAACCCCTACTACGGCGGCGGGTTAGGATCCGGCGGAAAGTTCCGGAAACCGCCGGCGAGAAGGTCTCGTAAAACTCCGTATGATCGACCACCGACCTCCGTGAAGAACCCTAGAAATGGGATCGGAGAAGACAGAGGCGGCGGAGGCTGGTTATCGAAATTGGTGGATCCGGCTCAGAGGCTTATCACGTACAGCGCTCATAGGCTCTTCGCGTCTGTGTTTCGGAAACGCCTCGTCTCAGGTGAGACGCCTTTACAGTCTCCGGAGCAGAAGCAGTTTCCAGAAAGAGATGTGATGCAGGAGGCTAAGGTTGGACACAGGGAGAATACTTCTGCTTTGTCTATGAAGAATGATTTGGTTCGGGTACACGAAGCCAATGGATTAGGCAATCCAAGCAAGGATGGATATACAGATCTTGAGAAAGTTTTGAAGGAGAAAACTTTTACAAGATCTGAAGTTGACCGATTAACTAGCCTGCTACGTTCGAAAGCTGTTGATTCATCCACTGTAAACTGGGATCAGAGAAATGAAGCGAGTGTTGCGAGAAATCCACCACCAGATGGGAGGGATATGGTGCATCCAGATAGTGGATTTATGAACACCCTTGTTTCAACACCTCTTGGAAGTTCGAGGGCTCTCGATGAGTGCATTGCTTCGCCGGCGCAGCTTGCAAAAGCTTACATGTGTAGCAGACCTTCAGAAGTTACTCCTATGCTGGGGCCACGTGGTCAAACGGGTAGGGAAGATTCTGTTTACCTGAACAGAACCCCATTTCCGTCAAAGTCACGTACAATGTCACTGGTACCAAAGCTTTCTGGACCAAGACCTCTGGAAAATGGTTTCCTCACCCCTAGATCTCTGGGAAGATCTGCTGTTTATAGCATGGCCAGAACACCATACTCTAGGCATCAGTCCACTGTTAAGGCATCTCCAACCACATGGGAAGAAAGCTTAGCTTCTGGTTCTAGAAAAGGATTTCAATCGGGTCTCAAACGGAGGAGCTCAGTGTTGGATACTGATATAGGATCTGCTGGCGCTGTTAGGAGGATTCGCCAGAAATCCAACCTTTCATTTAGAAGCTTGGCTCTGCCTGTCTCGGAAAGCCCACTTTCCGTTCGTGCCAGTGGTGGACAAAACATGACGCAAACATCGAAAGATGTAGGGGATATTCCTGGTTCAAATTTTAACCTTGTCCCTTCCACGTCGAGGGAGCTGGCTTCAAAAATATTGCAGCAAGTTAATAAAATGGTTTCACCGAAGAAGAAATCACCAAGTAGGTTATCACCATCTATGCTACGAGGCCCCGCTCTCAAGAGTCTTCAGAATCCGGAGGCGCCAAAGTTCTTGGATAATCTTCCTGAGAAGAAGGCAAATTTGCCAGGTTCTAGTCATCAAAAGCAGGAAAAAATTAGAGAGACTGGTGCCAGAGGGTTTTCGGGTCTGAAAGAGAAGACTGGTGATGCTGCTGGGGACACAAGCAAAGCAGGTTCCAGTAAAGATCACGAGACTTGTGTTAATGGTGCTTATTTGCCTCTCACAAGTTCTGTGGAAGAGCATCCTCCAAAAAAACGAGCATTTCGGATGGTAGCGGATGAGGATTTTGATGGTCATGGGGAGCCATCTACTCCATTTCAAGAGGCAGAAAAACAGAATACCTTGAAAGTGGAGAAAGATGTTGATATCAGCATGCGTAGAGGGAAGAAACCACTTATTTCGTCTGAGGTCATGGCCTCTACTTCATATATTCCTAATGGTGACGCCTCTCAGAGTACTTGTAATGGATCTCTGGAAACTGGAAGAAGCCAATTTTCTGCTTTACCCATTGAAGCTGTTCAGCAAAGTAATATGCCCTCTGAGCCAACTTCTAAGTTCATCCAAGGGACTGAGAAGTCGAGTATTTCTCCCGCCAAGCTAGCCTCAGAAGTGGAAGATATCTCTCGGGAAGAGCATACAAAAGCTGCTGCTGTGTTTCCCAGCACCTCCTCGTCACCGGCGGCTACTGACTTACTAAATCAAAACACGGGTCAATCTGCAGATATCAAGTTAGAAAAGCCGAGCAGCTTTGCTTTTGGAAAGCCAACTGAATCAGAGAAAACTGTTAGCAACAGTGCTTCGAGAATTGAGTCAACTACCTCAGCTGAATCAACCCTCAATGGTAGTATGTTCTCAGGCGGAGCAAACGCTATCAGTGAACTGAGTTCGACAAACTCCTTTGCAAGCTCTAGTGGTACATCGAGCACTTCCCCATTTGGTACAAACTGGCAAGCTCCCAACTCTTCTCCAGCCTTTGGTTCCTCATTCACCACTTCCTCATCTCAAACCTTTTCATTCGGAGGATCTTCTGCTGCTACCGGTTCAAGCACTTCTGCTCCCATCTTTCTCAGCTCAACCGCTCCTGCCATTCCTCAACAGTCAGTGTTTAGTAACCCAGCTCCCTCAACGACTCCGTCACAGTCTCCGTTTGGAAACTCAACACCCGGGTTTTTCCCACCACCAAATACAAATGGTTTCAACAATAACCAACACATGATCATTGAAGACAGTATGGCAGAAGACACAGAGCAAGCTAATAAATCATCCATGATACAACAGCCAGTGTTTGGACAACAACCTGTGTCAATGCCTCAGCCAAACTTTTCCTTTGGCGGAGCGTCAGCAACGCCACCTCCATCAATGGCTAACCCGTTCCAGTTTGGAGTCCAACCTATTGCAAGCACACAACAGAACTCATCACTTTTCCAGGCATCCCCCGGTCTAGACTTCCAAGGAGGTGGGAGCTTCTCACTGGGAAGCACTGGTGGCGGTGACAAGTCAGGCCGCAGAATCTTCAAAGCGAAGAAAACCAACAGAAAGAGATAA
Protein:  
MFTRKDDYTLTNLRRFYAPLLLFWSRYAPPSRYRAPQIKKKIKNPNPQIFRFFLSRKKFVENPRLDLTFSFRLMASAARGESSNPYYGGGLGSGGKFRKPPARRSRKTPYDRPPTSVKNPRNGIGEDRGGGGWLSKLVDPAQRLITYSAHRLFASVFRKRLVSGETPLQSPEQKQFPERDVMQEAKVGHRENTSALSMKNDLVRVHEANGLGNPSKDGYTDLEKVLKEKTFTRSEVDRLTSLLRSKAVDSSTVNWDQRNEASVARNPPPDGRDMVHPDSGFMNTLVSTPLGSSRALDECIASPAQLAKAYMCSRPSEVTPMLGPRGQTGREDSVYLNRTPFPSKSRTMSLVPKLSGPRPLENGFLTPRSLGRSAVYSMARTPYSRHQSTVKASPTTWEESLASGSRKGFQSGLKRRSSVLDTDIGSAGAVRRIRQKSNLSFRSLALPVSESPLSVRASGGQNMTQTSKDVGDIPGSNFNLVPSTSRELASKILQQVNKMVSPKKKSPSRLSPSMLRGPALKSLQNPEAPKFLDNLPEKKANLPGSSHQKQEKIRETGARGFSGLKEKTGDAAGDTSKAGSSKDHETCVNGAYLPLTSSVEEHPPKKRAFRMVADEDFDGHGEPSTPFQEAEKQNTLKVEKDVDISMRRGKKPLISSEVMASTSYIPNGDASQSTCNGSLETGRSQFSALPIEAVQQSNMPSEPTSKFIQGTEKSSISPAKLASEVEDISREEHTKAAAVFPSTSSSPAATDLLNQNTGQSADIKLEKPSSFAFGKPTESEKTVSNSASRIESTTSAESTLNGSMFSGGANAISELSSTNSFASSSGTSSTSPFGTNWQAPNSSPAFGSSFTTSSSQTFSFGGSSAATGSSTSAPIFLSSTAPAIPQQSVFSNPAPSTTPSQSPFGNSTPGFFPPPNTNGFNNNQHMIIEDSMAEDTEQANKSSMIQQPVFGQQPVSMPQPNFSFGGASATPPPSMANPFQFGVQPIASTQQNSSLFQASPGLDFQGGGSFSLGSTGGGDKSGRRIFKAKKTNRKR